30 November & 1 December 2021 | 9:30 am - 5:00 pm Central European Time (8:30 am - 4:00 pm Universal Time)
Instructors: Annajiat Alim Rasel, Horacio Vargas Guzman, Wayde Veldman
Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.
For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".
Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.
Where: Online at https://uva-live.zoom.us/j/88436158436.
When: 30 November & 1 December 2021 | 9:30 am - 5:00 pm Central European Time (8:30 am - 4:00 pm Universal Time). Add to your Google Calendar.
Requirements: Participants must must have access to a computer with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. You should have an up-to-date web browser installed on your computers, as well as a spreadsheet program (e.g. Excel). For Windows, you will also need to install either Git Bash, PuTTY, or the Ubuntu Subsystem. For more information see "Setup" below. The remaining programs that we will use are going to be on the Amazon Machine Image (AMI) instance which will be provided for you.
Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:
Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.
Contact: Please email i.m.m.vanderknaap@uva.nl , annajiat@gmail.com , horacio.v.g@gmail.com or wamiveld@gmail.com for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.
Please be sure to complete these surveys before and after the workshop.
| Before starting | Pre-workshop survey |
| Morning | Project Organization and Management by Horacio |
| Introduction to the Command Line by Annajiat | |
| Afternoon | Introduction to Cloud Computing for Genomics by Annajiat |
| Evening | END |
To participate in a Data Carpentry workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
The setup instructions for the Data Carpentry Genomics workshops can be found at the workshop overview site
.